PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00071g10004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 241aa    MW: 27433.2 Da    PI: 6.167
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00071g10004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.53.5e-131450642
                              HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              +s r+  + kR + ++KKAeE S+LCd++vav+if +
  Peinf101Scf00071g10004.1 14 ESVRNSILNKRVASLFKKAEEFSILCDVKVAVVIFNP 50
                              555666799*************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.059149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-16394IPR002100Transcription factor, MADS-box
PfamPF003192.4E-131451IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTRKRLNNTR NYSESVRNSI LNKRVASLFK KAEEFSILCD VKVAVVIFNP GKVEPIAWPS  60
YDQAKVIITR YVSFSEAERL KKLVRHETYL LEKVKAQEEN IIKIEKMNEE KEMELLFNQL  120
VEGKNINDLD AMQLKGLLKL SAKKIAKLAE RKKQLNQQNQ LKAKPANENE NIANQSDGLH  180
SVMSSESLME DLINDSWFIE TMATNNYCLD FESSSGIELA PAEGNDSNAG ESNDAHHKNI  240
D
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794692.17e-98PREDICTED: MADS-box protein AGL24-like
RefseqXP_016468130.17e-98PREDICTED: MADS-box protein AGL71-like
TrEMBLM1DAJ05e-80M1DAJ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000859051e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-16M-type_MADS family protein